If by any chance you don’t see it there, close MobaXterm and go to the WSL terminal, because probably the WSL is not allowing SSH connections. Just double-click it and you will be accessing it via MobaXterm.
Inside MobaXterm, you will probably will see that your WSL is already listed on the left panel as an available connection. Once you have that installed, you can download and install MobaXterm (which is the enhanced terminal with graphical capacity): On Windows10, install the WSL if you don’t have it. However, WSL does not offer a complete support for graphical interfaces (such as RStudio in our case), so we need an additional steps to make that happen. This allows you to run linux/bash commands from within windows without the need of a virtual machine nor a dual-boot setup (i.e. The good news is that is changed on windows10, in which they offer native linux support via the Windows Subsystem for Linux (WSL2). Unfortunately, not all packages available on conda are compatible with windows machines. After installing Conda, download the course Conda file and put it in your working folder. We suggest installing either Miniconda3 (NOT Anaconda). Install Conda and download the environment file
You can read more about Conda environments and other important concepts to help you make your research reproducible. Deactivate the environment after running your analyses.Two of the required software are not available as Conda packages, please see the separate instructions for installing SingleR and CHETAH. You can use in order to reproduce all your results. See and graphical example below:Ĭonda environments are a self-contained directory that This enforces reproducibility for you to run this material without the need to re-install or change your local versions. This is because conda environments allow all students to have the save computing environment, i.e. In this workshop you will use conda environments to run the exercises.
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